IL_5JUO_033

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_033 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.3334

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

5JUO|1|A|G|616
5JUO|1|A|U|617
5JUO|1|A|U|618
5JUO|1|A|A|619
5JUO|1|A|A|620
5JUO|1|A|A|621
5JUO|1|A|A|622
*
5JUO|1|A|U|1104
5JUO|1|A|C|1105

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain UB

uS12 (yeast S23)

Chain XB

eS26 (yeast S26)