IL_5JUO_035
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_035 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.3508
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5JUO|1|A|C|627
5JUO|1|A|G|628
5JUO|1|A|U|629
5JUO|1|A|A|630
5JUO|1|A|G|631
*
5JUO|1|A|U|968
5JUO|1|A|C|969
5JUO|1|A|A|970
5JUO|1|A|A|971
5JUO|1|A|G|972
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain IB
- uS17 (yeast S11)
- Chain KB
- uS15 (yeast S13)
- Chain TB
- uS8 (yeast S22)
- Chain UB
- uS12 (yeast S23)
Coloring options: