IL_5JUO_114
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGAAGC*GUGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_114 not in the Motif Atlas
- Geometric match to IL_7A0S_018
- Geometric discrepancy: 0.2615
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_57885.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5JUO|1|B|U|834
5JUO|1|B|G|835
5JUO|1|B|A|836
5JUO|1|B|A|837
5JUO|1|B|G|838
5JUO|1|B|C|839
*
5JUO|1|B|G|854
5JUO|1|B|U|855
5JUO|1|B|G|856
5JUO|1|B|G|857
5JUO|1|B|A|858
5JUO|1|B|G|859
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain UA
- eL43 (yeast L43)
- Chain W
- eL19 (yeast L19)
Coloring options: