IL_5JUO_133
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 5JUO|1|B|U|1191, 5JUO|1|B|C|1192, 5JUO|1|B|C|1316, 5JUO|1|B|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_133 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.296
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5JUO|1|B|C|1187
5JUO|1|B|U|1188
5JUO|1|B|C|1189
5JUO|1|B|A|1190
5JUO|1|B|U|1191
5JUO|1|B|C|1192
5JUO|1|B|A|1193
5JUO|1|B|G|1194
*
5JUO|1|B|C|1314
5JUO|1|B|U|1315
5JUO|1|B|C|1316
5JUO|1|B|A|1317
5JUO|1|B|A|1318
5JUO|1|B|G|1319
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain M
- uL6 (yeast L9)
- Chain R
- eL14 (yeast L14)
- Chain RA
- eL40 (yeast L40)
- Chain T
- uL13 (yeast L16)
- Chain X
- eL20 (yeast L20)
Coloring options: