IL_5JUO_136
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 5JUO|1|B|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_136 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.3997
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5JUO|1|B|U|1218
5JUO|1|B|C|1219
5JUO|1|B|U|1220
5JUO|1|B|A|1221
5JUO|1|B|G|1222
5JUO|1|B|A|1223
5JUO|1|B|C|1224
5JUO|1|B|A|1225
5JUO|1|B|G|1226
*
5JUO|1|B|C|1283
5JUO|1|B|C|1284
5JUO|1|B|G|1285
5JUO|1|B|A|1286
5JUO|1|B|A|1287
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain M
- uL6 (yeast L9)
- Chain RA
- eL40 (yeast L40)
- Chain VA
- uL10 (yeast P0)
- Chain X
- eL20 (yeast L20)
Coloring options: