IL_5JUO_160

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCUC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_160 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3229

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5JUO|1|B|G|1940
5JUO|1|B|C|1941
5JUO|1|B|U|1942
5JUO|1|B|C|1943
*
5JUO|1|B|G|2105
5JUO|1|B|A|2106
5JUO|1|B|A|2107
5JUO|1|B|C|2108

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)

Chain W

eL19 (yeast L19)