IL_5JUP_019
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 5JUP|1|A|U|313, 5JUP|1|A|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_019 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1206
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5JUP|1|A|U|311
5JUP|1|A|A|312
5JUP|1|A|U|313
5JUP|1|A|C|314
5JUP|1|A|A|315
5JUP|1|A|A|316
*
5JUP|1|A|U|348
5JUP|1|A|U|349
5JUP|1|A|U|350
5JUP|1|A|C|351
5JUP|1|A|A|352
5JUP|1|A|A|353
5JUP|1|A|C|354
5JUP|1|A|G|355
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain FB
- eS8 (yeast S8)
- Chain IB
- uS17 (yeast S11)
- Chain UB
- uS12 (yeast S23)
Coloring options: