IL_5JUP_032
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 5JUP|1|A|A|579, 5JUP|1|A|U|581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_032 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.2008
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JUP|1|A|G|562
5JUP|1|A|U|563
5JUP|1|A|G|564
5JUP|1|A|C|565
5JUP|1|A|C|566
5JUP|1|A|A|567
5JUP|1|A|G|568
*
5JUP|1|A|C|575
5JUP|1|A|G|576
5JUP|1|A|G|577
5JUP|1|A|U|578
5JUP|1|A|A|579
5JUP|1|A|A|580
5JUP|1|A|U|581
5JUP|1|A|U|582
5JUP|1|A|C|583
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AB
- uS3 (yeast S3)
- Chain BC
- eS30 (yeast S30)
- Chain DC
- yeast eEF2
- Chain EC
- IRES
- Chain UB
- uS12 (yeast S23)
Coloring options: