IL_5JUP_053
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5JUP|1|A|C|1158, 5JUP|1|A|C|1159
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_053 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1938
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5JUP|1|A|A|1157
5JUP|1|A|C|1158
5JUP|1|A|C|1159
5JUP|1|A|A|1160
*
5JUP|1|A|U|1617
5JUP|1|A|C|1618
5JUP|1|A|C|1619
5JUP|1|A|C|1620
5JUP|1|A|U|1621
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain CB
- uS7 (yeast S5)
- Chain NB
- uS9 (yeast S16)
- Chain RB
- uS10 (yeast S20)
- Chain ZB
- eS28 (yeast S28)
Coloring options: