IL_5JUP_091
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_091 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.0977
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|B|C|82
5JUP|1|B|U|83
5JUP|1|B|U|84
5JUP|1|B|A|85
5JUP|1|B|G|86
5JUP|1|B|U|87
5JUP|1|B|A|88
5JUP|1|B|A|89
*
5JUP|1|B|U|97
5JUP|1|B|G|98
5JUP|1|B|A|99
5JUP|1|B|A|100
5JUP|1|B|G|101
5JUP|1|B|C|102
5JUP|1|B|G|103
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
- Chain V
- eL18 (yeast L18)
Coloring options: