IL_5JUP_105
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5JUP|1|B|U|534, 5JUP|1|B|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_105 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.1394
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|B|G|531
5JUP|1|B|A|532
5JUP|1|B|A|533
5JUP|1|B|U|534
5JUP|1|B|G|535
5JUP|1|B|U|536
5JUP|1|B|A|537
5JUP|1|B|G|538
*
5JUP|1|B|U|553
5JUP|1|B|A|554
5JUP|1|B|U|555
5JUP|1|B|U|556
5JUP|1|B|A|557
5JUP|1|B|U|558
5JUP|1|B|A|559
5JUP|1|B|G|560
5JUP|1|B|C|561
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain R
- eL14 (yeast L14)
- Chain X
- eL20 (yeast L20)
Coloring options: