IL_5JUP_113
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5JUP|1|B|A|933, 5JUP|1|B|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_113 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.0918
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUP|1|B|G|805
5JUP|1|B|A|806
5JUP|1|B|A|807
5JUP|1|B|A|808
5JUP|1|B|G|809
*
5JUP|1|B|C|931
5JUP|1|B|U|932
5JUP|1|B|A|933
5JUP|1|B|G|934
5JUP|1|B|U|935
5JUP|1|B|A|936
5JUP|1|B|G|937
5JUP|1|B|C|938
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain H
- uL4 (yeast L4)
- Chain OA
- eL37 (yeast L37)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
Coloring options: