IL_5JUP_123
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_123 not in the Motif Atlas
- Homologous match to IL_5TBW_038
- Geometric discrepancy: 0.0848
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JUP|1|B|G|991
5JUP|1|B|A|992
5JUP|1|B|G|993
5JUP|1|B|G|994
5JUP|1|B|U|995
5JUP|1|B|A|996
5JUP|1|B|A|997
*
5JUP|1|B|U|1052
5JUP|1|B|A|1053
5JUP|1|B|A|1054
5JUP|1|B|A|1055
5JUP|1|B|U|1056
5JUP|1|B|A|1057
5JUP|1|B|U|1058
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain I
- uL18 (yeast L5)
- Chain K
- uL30 (yeast L7)
- Chain N
- uL16 (yeast L10)
- Chain Y
- eL21 (yeast L21)
Coloring options: