IL_5JUP_217

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

5JUP|1|B|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUP_217 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1245

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5JUP|1|B|G|3328
5JUP|1|B|U|3329
5JUP|1|B|A|3330
*
5JUP|1|B|U|3373
5JUP|1|B|U|3374
5JUP|1|B|A|3375
5JUP|1|B|A|3376
5JUP|1|B|G|3377
5JUP|1|B|C|3378

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain BA

eL24 (yeast L24)

Chain G

uL3 (yeast L3)

Chain IA

eL31 (yeast L31)