IL_5JUS_043
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 5JUS|1|A|G|876
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_043 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.3375
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5JUS|1|A|C|874
5JUS|1|A|G|875
5JUS|1|A|G|876
5JUS|1|A|G|877
5JUS|1|A|G|878
*
5JUS|1|A|C|950
5JUS|1|A|A|951
5JUS|1|A|A|952
5JUS|1|A|G|953
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain HA
- eL30 (yeast L30)
- Chain KB
- uS15 (yeast S13)
- Chain XB
- eS26 (yeast S26)
- Chain YA
- eS1 (yeast S1)
Coloring options: