IL_5JUS_119
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAGUU*AAUG
- Length
- 9 nucleotides
- Bulged bases
- 5JUS|1|B|G|984
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_119 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2053
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5JUS|1|B|C|982
5JUS|1|B|A|983
5JUS|1|B|G|984
5JUS|1|B|U|985
5JUS|1|B|U|986
*
5JUS|1|B|A|1098
5JUS|1|B|A|1099
5JUS|1|B|U|1100
5JUS|1|B|G|1101
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain GA
- eL29 (yeast L29)
- Chain K
- uL30 (yeast L7)
- Chain V
- eL18 (yeast L18)
- Chain Y
- eL21 (yeast L21)
Coloring options: