IL_5JUS_143
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- 5JUS|1|B|G|1514
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_143 not in the Motif Atlas
- Homologous match to IL_5TBW_062
- Geometric discrepancy: 0.2359
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|B|G|1500
5JUS|1|B|U|1501
5JUS|1|B|C|1502
5JUS|1|B|A|1503
5JUS|1|B|A|1504
5JUS|1|B|C|1505
*
5JUS|1|B|G|1513
5JUS|1|B|G|1514
5JUS|1|B|A|1515
5JUS|1|B|C|1516
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain QA
- eL39 (yeast L39)
- Chain U
- uL22 (yeast L17)
- Chain W
- eL19 (yeast L19)
Coloring options: