IL_5JUS_198

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

5JUS|1|B|C|3092

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_198 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.2061

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5JUS|1|B|U|3047
5JUS|1|B|A|3048
5JUS|1|B|A|3049
5JUS|1|B|U|3050
5JUS|1|B|U|3051
*
5JUS|1|B|A|3091
5JUS|1|B|C|3092
5JUS|1|B|C|3093
5JUS|1|B|A|3094

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain AA

uL14 (yeast L23)

Chain BA

eL24 (yeast L24)

Chain G

uL3 (yeast L3)