IL_5JUS_232
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5JUS|1|A|G|1228, 5JUS|1|A|U|1258
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_232 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.4016
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5JUS|1|A|A|1224
5JUS|1|A|U|1225
5JUS|1|A|A|1226
5JUS|1|A|A|1227
5JUS|1|A|G|1228
5JUS|1|A|G|1229
5JUS|1|A|A|1230
5JUS|1|A|U|1231
5JUS|1|A|U|1232
5JUS|1|A|G|1233
*
5JUS|1|A|C|1252
5JUS|1|A|U|1253
5JUS|1|A|U|1254
5JUS|1|A|G|1255
5JUS|1|A|A|1256
5JUS|1|A|U|1257
5JUS|1|A|U|1258
5JUS|1|A|U|1259
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain CC
- eS31 (yeast S31)
- Chain HB
- eS10 (yeast S10)
- Chain JB
- eS12 (yeast S12)
Coloring options: