IL_5JUT_055

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

5JUT|1|A|C|1158, 5JUT|1|A|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_055 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.234

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

5JUT|1|A|A|1157
5JUT|1|A|C|1158
5JUT|1|A|C|1159
5JUT|1|A|A|1160
*
5JUT|1|A|U|1617
5JUT|1|A|C|1618
5JUT|1|A|C|1619
5JUT|1|A|C|1620
5JUT|1|A|U|1621

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain CB

uS7 (yeast S5)

Chain NB

uS9 (yeast S16)

Chain ZB

eS28 (yeast S28)