IL_5JUT_145

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

5JUT|1|B|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_145 not in the Motif Atlas

Homologous match to IL_5TBW_062

Geometric discrepancy: 0.222

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5JUT|1|B|G|1500
5JUT|1|B|U|1501
5JUT|1|B|C|1502
5JUT|1|B|A|1503
5JUT|1|B|A|1504
5JUT|1|B|C|1505
*
5JUT|1|B|G|1513
5JUT|1|B|G|1514
5JUT|1|B|A|1515
5JUT|1|B|C|1516

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain QA

eL39 (yeast L39)

Chain U

uL22 (yeast L17)

Chain W

eL19 (yeast L19)