IL_5JUT_152

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_152 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2414

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5JUT|1|B|U|1645
5JUT|1|B|G|1646
5JUT|1|B|A|1647
5JUT|1|B|A|1648
5JUT|1|B|U|1649
*
5JUT|1|B|A|1806
5JUT|1|B|G|1807
5JUT|1|B|G|1808
5JUT|1|B|A|1809
5JUT|1|B|A|1810

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain EA

eL27 (yeast L27)

Chain F

uL2 (yeast L2)

Chain LA

eL34 (yeast L34)