IL_5JUT_195
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_195 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.209
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5JUT|1|B|C|3018
5JUT|1|B|U|3019
5JUT|1|B|U|3020
5JUT|1|B|A|3021
5JUT|1|B|G|3022
5JUT|1|B|U|3023
5JUT|1|B|A|3024
5JUT|1|B|C|3025
*
5JUT|1|B|G|3030
5JUT|1|B|G|3031
5JUT|1|B|A|3032
5JUT|1|B|A|3033
5JUT|1|B|C|3034
5JUT|1|B|A|3035
5JUT|1|B|G|3036
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain DC
- yeast eEF2
- Chain G
- uL3 (yeast L3)
- Chain M
- uL6 (yeast L9)
- Chain RA
- eL40 (yeast L40)
Coloring options: