IL_5K0Y_014

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_014 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3166

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

5K0Y|1|A|C|213
5K0Y|1|A|A|214
5K0Y|1|A|U|215
5K0Y|1|A|U|216
*
5K0Y|1|A|A|293
5K0Y|1|A|C|294
5K0Y|1|A|C|295
5K0Y|1|A|U|296
5K0Y|1|A|C|297
5K0Y|1|A|G|298
5K0Y|1|A|G|299
5K0Y|1|A|G|300

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4

Chain o

40S ribosomal protein S8