IL_5K0Y_018
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 5K0Y|1|A|U|351, 5K0Y|1|A|C|389
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_018 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1616
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5K0Y|1|A|U|349
5K0Y|1|A|A|350
5K0Y|1|A|U|351
5K0Y|1|A|C|352
5K0Y|1|A|A|353
5K0Y|1|A|A|354
*
5K0Y|1|A|U|386
5K0Y|1|A|G|387
5K0Y|1|A|A|388
5K0Y|1|A|C|389
5K0Y|1|A|C|390
5K0Y|1|A|A|391
5K0Y|1|A|C|392
5K0Y|1|A|G|393
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain Q
- ribosomal protein uS12
- Chain o
- 40S ribosomal protein S8
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