IL_5K0Y_024
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CCACUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 5K0Y|1|A|G|497
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_024 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.1599
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5K0Y|1|A|C|481
5K0Y|1|A|C|482
5K0Y|1|A|A|483
5K0Y|1|A|C|484
5K0Y|1|A|U|485
5K0Y|1|A|C|486
*
5K0Y|1|A|G|496
5K0Y|1|A|G|497
5K0Y|1|A|A|498
5K0Y|1|A|G|499
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4
- Chain s
- 40S ribosomal protein S24
Coloring options: