IL_5K0Y_029
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GUCGCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 5K0Y|1|A|A|618, 5K0Y|1|A|U|620
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_029 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1677
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|G|601
5K0Y|1|A|U|602
5K0Y|1|A|C|603
5K0Y|1|A|G|604
5K0Y|1|A|C|605
5K0Y|1|A|A|606
5K0Y|1|A|G|607
*
5K0Y|1|A|C|614
5K0Y|1|A|G|615
5K0Y|1|A|G|616
5K0Y|1|A|U|617
5K0Y|1|A|A|618
5K0Y|1|A|A|619
5K0Y|1|A|U|620
5K0Y|1|A|U|621
5K0Y|1|A|C|622
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- mRNA
- Chain Q
- ribosomal protein uS12
- Chain V
- ribosomal protein eS30
- Chain g
- ribosomal protein uS3
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