IL_5K0Y_032
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_032 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1359
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5K0Y|1|A|C|666
5K0Y|1|A|G|667
5K0Y|1|A|U|668
5K0Y|1|A|A|669
5K0Y|1|A|G|670
*
5K0Y|1|A|U|1021
5K0Y|1|A|C|1022
5K0Y|1|A|A|1023
5K0Y|1|A|A|1024
5K0Y|1|A|G|1025
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- ribosomal protein uS17
- Chain Q
- ribosomal protein uS12
- Chain Z
- ribosomal protein uS15
- Chain a
- ribosomal protein uS8
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