IL_5K0Y_043

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

5K0Y|1|A|G|929

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_043 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1683

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5K0Y|1|A|C|927
5K0Y|1|A|G|928
5K0Y|1|A|G|929
5K0Y|1|A|G|930
5K0Y|1|A|G|931
*
5K0Y|1|A|C|1003
5K0Y|1|A|A|1004
5K0Y|1|A|A|1005
5K0Y|1|A|G|1006

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Z

ribosomal protein uS15

Chain i

ribosomal protein eS1

Chain k

ribosomal protein eS26