IL_5K0Y_077
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 5K0Y|1|A|C|1549, 5K0Y|1|A|U|1550, 5K0Y|1|A|A|1575, 5K0Y|1|A|C|1576
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_077 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.3576
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5K0Y|1|A|G|1545
5K0Y|1|A|U|1546
5K0Y|1|A|G|1547
5K0Y|1|A|C|1548
5K0Y|1|A|C|1549
5K0Y|1|A|U|1550
5K0Y|1|A|A|1551
5K0Y|1|A|C|1552
5K0Y|1|A|C|1553
*
5K0Y|1|A|G|1572
5K0Y|1|A|U|1573
5K0Y|1|A|A|1574
5K0Y|1|A|A|1575
5K0Y|1|A|C|1576
5K0Y|1|A|C|1577
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- ribosomal protein uS14
- Chain g
- ribosomal protein uS3
- Chain h
- ribosomal protein uS10
- Chain t
- ribosomal protein eS10
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