IL_5K0Y_101
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5K0Y|1|A|C|1211, 5K0Y|1|A|C|1212
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_101 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.2105
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
5K0Y|1|A|A|1210
5K0Y|1|A|C|1211
5K0Y|1|A|C|1212
5K0Y|1|A|A|1213
*
5K0Y|1|A|U|1676
5K0Y|1|A|C|1677
5K0Y|1|A|C|1678
5K0Y|1|A|C|1679
5K0Y|1|A|U|1680
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- ribosomal protein uS9
- Chain N
- Transfer RNA; tRNA
- Chain U
- ribosomal protein uS7
- Chain e
- ribosomal protein eS17
- Chain l
- ribosomal protein eS28
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