IL_5K0Y_104
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5K0Y|1|A|C|1327, 5K0Y|1|A|U|1490, 5K0Y|1|A|G|1493
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_104 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1461
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5K0Y|1|A|U|1325
5K0Y|1|A|G|1326
5K0Y|1|A|C|1327
5K0Y|1|A|A|1328
5K0Y|1|A|U|1329
5K0Y|1|A|G|1330
5K0Y|1|A|G|1331
*
5K0Y|1|A|U|1488
5K0Y|1|A|C|1489
5K0Y|1|A|U|1490
5K0Y|1|A|G|1491
5K0Y|1|A|U|1492
5K0Y|1|A|G|1493
5K0Y|1|A|A|1494
5K0Y|1|A|U|1495
5K0Y|1|A|G|1496
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- mRNA
- Chain J
- ribosomal protein uS14
- Chain g
- ribosomal protein uS3
- Chain h
- ribosomal protein uS10
- Chain t
- ribosomal protein eS10
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