IL_5KCR_032

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5KCR|1|1A|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_032 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.0438

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

5KCR|1|1A|C|994
5KCR|1|1A|C|995
5KCR|1|1A|A|996
*
5KCR|1|1A|U|1159
5KCR|1|1A|G|1160

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21