IL_5KCR_036

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5KCR|1|1A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_036 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0459

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5KCR|1|1A|U|1018
5KCR|1|1A|U|1019
5KCR|1|1A|A|1020
5KCR|1|1A|A|1021
5KCR|1|1A|G|1022
5KCR|1|1A|U|1023
5KCR|1|1A|G|1024
*
5KCR|1|1A|C|1140
5KCR|1|1A|U|1141
5KCR|1|1A|A|1142
5KCR|1|1A|A|1143
5KCR|1|1A|A|1144

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1N

50S ribosomal protein L13