IL_5KCR_178
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCR_178 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.146
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5KCR|1|1a|A|1430
5KCR|1|1a|A|1431
5KCR|1|1a|G|1432
5KCR|1|1a|A|1433
5KCR|1|1a|A|1434
5KCR|1|1a|G|1435
*
5KCR|1|1a|C|1466
5KCR|1|1a|C|1467
5KCR|1|1a|A|1468
5KCR|1|1a|C|1469
5KCR|1|1a|U|1470
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1T
- 50S ribosomal protein L19
- Chain 1t
- 30S ribosomal protein S20
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