IL_5KPS_035

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5KPS|1|27|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1347

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5KPS|1|27|U|684
5KPS|1|27|G|685
5KPS|1|27|U|686
5KPS|1|27|A|687
5KPS|1|27|G|688
*
5KPS|1|27|C|699
5KPS|1|27|G|700
5KPS|1|27|U|701
5KPS|1|27|A|702
5KPS|1|27|G|703
5KPS|1|27|A|704
5KPS|1|27|G|705
5KPS|1|27|A|706

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S11

Chain 28

Large subunit ribosomal RNA; LSU rRNA