IL_5KPS_135

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5KPS|1|28|A|1801, 5KPS|1|28|C|1816, 5KPS|1|28|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_135 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1071

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5KPS|1|28|U|1798
5KPS|1|28|G|1799
5KPS|1|28|C|1800
5KPS|1|28|A|1801
5KPS|1|28|A|1802
5KPS|1|28|A|1803
5KPS|1|28|C|1804
*
5KPS|1|28|G|1813
5KPS|1|28|G|1814
5KPS|1|28|A|1815
5KPS|1|28|C|1816
5KPS|1|28|G|1817
5KPS|1|28|U|1818
5KPS|1|28|A|1819
5KPS|1|28|U|1820
5KPS|1|28|A|1821

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 27

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2