IL_5KPS_163

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5KPS|1|28|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_163 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0958

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5KPS|1|28|C|2636
5KPS|1|28|U|2637
5KPS|1|28|G|2638
5KPS|1|28|A|2639
5KPS|1|28|G|2640
*
5KPS|1|28|C|2774
5KPS|1|28|G|2775
5KPS|1|28|A|2776
5KPS|1|28|G|2777
5KPS|1|28|A|2778
5KPS|1|28|U|2779
5KPS|1|28|G|2780
5KPS|1|28|A|2781
5KPS|1|28|G|2782

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain J

50S ribosomal protein L13