IL_5L3P_034

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_034 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.2344

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5L3P|1|A|U|1018
5L3P|1|A|U|1019
5L3P|1|A|A|1020
5L3P|1|A|A|1021
5L3P|1|A|G|1022
5L3P|1|A|U|1023
5L3P|1|A|G|1024
*
5L3P|1|A|C|1140
5L3P|1|A|U|1141
5L3P|1|A|A|1142
5L3P|1|A|A|1143
5L3P|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain N

50S ribosomal protein L13