IL_5L3P_091

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5L3P|1|A|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_091 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1717

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5L3P|1|A|C|2636
5L3P|1|A|U|2637
5L3P|1|A|G|2638
5L3P|1|A|A|2639
5L3P|1|A|G|2640
*
5L3P|1|A|C|2774
5L3P|1|A|G|2775
5L3P|1|A|A|2776
5L3P|1|A|G|2777
5L3P|1|A|A|2778
5L3P|1|A|U|2779
5L3P|1|A|G|2780
5L3P|1|A|A|2781
5L3P|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain N

50S ribosomal protein L13