IL_5L3P_195

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_195 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1729

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5L3P|1|a|C|1303
5L3P|1|a|G|1304
5L3P|1|a|G|1305
5L3P|1|a|A|1306
5L3P|1|a|U|1307
5L3P|1|a|U|1308
*
5L3P|1|a|A|1329
5L3P|1|a|U|1330
5L3P|1|a|G|1331
5L3P|1|a|A|1332
5L3P|1|a|A|1333
5L3P|1|a|G|1334

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13