IL_5LKS_050

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_050 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.2028

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5LKS|1|L5|G|2358
5LKS|1|L5|U|2359
5LKS|1|L5|A|2360
5LKS|1|L5|G|2361
5LKS|1|L5|U|2362
5LKS|1|L5|A|2363
5LKS|1|L5|G|2364
*
5LKS|1|L5|C|3858
5LKS|1|L5|G|3859
5LKS|1|L5|A|3860
5LKS|1|L5|A|3861
5LKS|1|L5|A|3862
5LKS|1|L5|C|3863

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17