IL_5LKS_051

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUGGC*GCGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_051 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.3842

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5LKS|1|L5|G|2542
5LKS|1|L5|A|2543
5LKS|1|L5|G|2544
5LKS|1|L5|U|2545
5LKS|1|L5|G|2546
5LKS|1|L5|G|2547
5LKS|1|L5|C|2548
*
5LKS|1|L5|G|2771
5LKS|1|L5|C|2772
5LKS|1|L5|G|2773
5LKS|1|L5|C|2774

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38