IL_5LKS_061

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

5LKS|1|L5|A|3663, 5LKS|1|L5|U|3679, 5LKS|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_061 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.1579

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5LKS|1|L5|C|3660
5LKS|1|L5|G|3661
5LKS|1|L5|A|3662
5LKS|1|L5|A|3663
5LKS|1|L5|G|3664
5LKS|1|L5|G|3665
*
5LKS|1|L5|U|3677
5LKS|1|L5|G|3678
5LKS|1|L5|U|3679
5LKS|1|L5|U|3680
5LKS|1|L5|G|3681
5LKS|1|L5|A|3682
5LKS|1|L5|C|3683
5LKS|1|L5|G|3684

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA