IL_5LKS_123
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCACUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 5LKS|1|S2|G|507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_123 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.247
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5LKS|1|S2|C|491
5LKS|1|S2|C|492
5LKS|1|S2|A|493
5LKS|1|S2|C|494
5LKS|1|S2|U|495
5LKS|1|S2|C|496
*
5LKS|1|S2|G|506
5LKS|1|S2|G|507
5LKS|1|S2|A|508
5LKS|1|S2|G|509
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: