IL_5LKS_133
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGGGGC*GCCAAG
- Length
- 13 nucleotides
- Bulged bases
- 5LKS|1|S2|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_133 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3891
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LKS|1|S2|C|931
5LKS|1|S2|G|932
5LKS|1|S2|G|933
5LKS|1|S2|G|934
5LKS|1|S2|G|935
5LKS|1|S2|G|936
5LKS|1|S2|C|937
*
5LKS|1|S2|G|1005
5LKS|1|S2|C|1006
5LKS|1|S2|C|1007
5LKS|1|S2|A|1008
5LKS|1|S2|A|1009
5LKS|1|S2|G|1010
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain Lc
- 60S ribosomal protein L30
- Chain Lp
- 60S ribosomal protein L37a
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain Sa
- 40S ribosomal protein S26
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