IL_5LKS_185
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACUUUU*AGAACU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_185 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3706
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LKS|1|L5|A|1858
5LKS|1|L5|C|1859
5LKS|1|L5|U|1860
5LKS|1|L5|U|1861
5LKS|1|L5|U|1862
5LKS|1|L5|U|1863
*
5LKS|1|L5|A|1871
5LKS|1|L5|G|1872
5LKS|1|L5|A|1873
5LKS|1|L5|A|1874
5LKS|1|L5|C|1875
5LKS|1|L5|U|1876
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- 60S ribosomal protein L7
- Chain LI
- 60S ribosomal protein L10-like
- Chain Lb
- Ribosomal protein L29, isoform CRA_a
Coloring options: