IL_5LKS_187
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- 5LKS|1|L5|G|1912
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LKS_187 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.2364
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
5LKS|1|L5|C|1911
5LKS|1|L5|G|1912
5LKS|1|L5|C|1913
5LKS|1|L5|C|1914
5LKS|1|L5|C|1915
5LKS|1|L5|G|1916
5LKS|1|L5|A|1917
5LKS|1|L5|U|1918
*
5LKS|1|L5|G|2064
5LKS|1|L5|G|2065
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
- Chain Lf
- 60S ribosomal protein L35a
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