IL_5LZB_102

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5LZB|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZB_102 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.13

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5LZB|1|A|C|2636
5LZB|1|A|U|2637
5LZB|1|A|G|2638
5LZB|1|A|A|2639
5LZB|1|A|G|2640
*
5LZB|1|A|C|2774
5LZB|1|A|G|2775
5LZB|1|A|A|2776
5LZB|1|A|G|2777
5LZB|1|A|A|2778
5LZB|1|A|U|2779
5LZB|1|A|G|2780
5LZB|1|A|A|2781
5LZB|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13