3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
5LZB|1|a|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZB_152 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.1758
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

5LZB|1|a|U|684
5LZB|1|a|G|685
5LZB|1|a|U|686
5LZB|1|a|A|687
5LZB|1|a|G|688
*
5LZB|1|a|C|699
5LZB|1|a|G|700
5LZB|1|a|U|701
5LZB|1|a|A|702
5LZB|1|a|G|703
5LZB|1|a|A|704
5LZB|1|a|G|705
5LZB|1|a|A|706

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S11

Coloring options:


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